U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX15038463: GSM6070920: Nile rat Male 8 weeks; Arvicanthis niloticus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 66.7M spots, 20.1G bases, 6Gb downloads

External Id: GSM6070920_r1
Submitted by: Institute of Population Health Sciences, National Health Research Institutes
Study: Next Generation Sequencing and Quantitative Analysis of Mus musculus and Arvicanthis niloticus Olfactory Epithelium Transcriptomes
show Abstracthide Abstract
To quantify gene expression differences in olfactory epithelium between the mouse (Mus musculus) and the Nile rat (Arvicanthis niloticus), paired-end RNA sequencing (RNA-seq) was used to profile olfactory epithelium transcriptomes of six Nile rats and six mice (C57BL/6J) (one male and one female at the age of 8, 12, and 16 weeks for each species). Overall design: Olfactory epithelium mRNA profiles of 8-week, 12-week, 16-week old male and female mice (Mus musculus) (C57BL/67Narl) and Nile rats (Arvicanthis niloticus) ***Please note that processed data files have been updated on Aug 1, 2024****
Sample: Nile rat Male 8 weeks
SAMN27926302 • SRS12785320 • All experiments • All runs
Library:
Name: GSM6070920
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: The olfactory epithelium was dissected out from the nasal cavity for each sample. The total RNA was isolated by TRIzol Reagent and subsequently purified with the RNeasy Mini Kit (Qiagen, Hilden, Germany). The quantity and purity of the isolated RNA were measured by NanoDrop ND-1000 Spectrophotometer before cDNA library construction. The cDNA libearies were constructed by TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA). Briefly, mRNA was purified from total RNA (1 μg) by oligo(dT)-coupled magnetic beads and fragmented into small pieces under elevated temperature. The first-strand cDNA was synthesized using reverse transcriptase and random primers. After the generation of double-strand cDNA and adenylation on 3' ends of DNA fragments, the adaptors were ligated, and the samples were purified with AMPure XP system (Beckman Coulter, Beverly, USA). The quality of the libraries was assessed on the Agilent Bioanalyzer 2100 system and a Real-Time PCR system.
Runs: 1 run, 66.7M spots, 20.1G bases, 6Gb
Run# of Spots# of BasesSizePublished
SRR2252629066,656,23220.1G6Gb2022-12-05

ID:
21510799

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...