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SRX14852907: GSM6043868: Control_24h_rep1; Solanum lycopersicum; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 15.8M spots, 4G bases, 1.2Gb downloads

External Id: GSM6043868_r1
Submitted by: INRAE, LAE
Study: Transcriptomic analysis of the tomato plant response to Tuta absoluta herbivory
show Abstracthide Abstract
Tomato plants are submitted to a high diversity of herbivory pests, among them the leafminer Tuta absoluta, considered as one of the most important threat on the tomato worldwide production. In spite of its susceptibility to this pest, a better understanding of the tomato plant response to T. absoluta herbivory will help defining plant resistance traits and enlarging the range of possibilities for an efficient integrated pest management strategy. We analyzed the transcriptomic response in leaves of tomato (cv. Better Bush) submitted to the herbivory of T. absoluta larvae after 5h and 24h. Overall design: Six tomato plants were infested with 6 larvae deposited on the three terminal leaflets of the 3rd true leaf and six control plants were subject to mock deposition. Two harvests were conducted after 5 h and 24 h of herbivory. At both harvest time, the infested leaflets from which the larvae have been removed (and the corresponding leaflets of the control plant) were sampled, immediately frozen in liquid nitrogen and stored at -80°C until RNA extraction. Twelve RNA bank were created corresponding to 4 conditions in triplicates (Tuta infested 5h and 24h; control 5h and 24h)
Sample: Control_24h_rep1
SAMN27584798 • SRS12607394 • All experiments • All runs
Library:
Name: GSM6043868
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was harvested using EZNA Plant RNA kit mini plus kit (Omega bio-tek, Norcross, GA, USA). Three micrograms of total RNA were used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using Illumina HiSeq 2500
Runs: 1 run, 15.8M spots, 4G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1875300415,834,0674G1.2Gb2022-04-18

ID:
21276064

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