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SRX14787058: GSM6034962: Skin of a patient affected by limited (ACA) sclerodermia [C_22_L]; human skin metagenome; OTHER
1 ILLUMINA (Illumina MiSeq) run: 107,391 spots, 63.4M bases, 33.6Mb downloads

External Id: GSM6034962_r1
Submitted by: Experimental and Clinical Biomedical Sciences, University of Florence
Study: 16S V3-V4 -based microbial profiling of stool, skin and saliva samples of patients affected by systemic sclerosis (SSc)
show Abstracthide Abstract
Systemic sclerosis (SSc) is a complex and still unclear rare disease associated with fibrosis in multiple organs. Microbiota has recently emerged as an important environmental factor in SSc pathogenesis, either at gut, oral and skin level. Overall design: DNA extraction from stool, skin and saliva samples collected from 26 patients affected by SSc, generatoin of amplicons of the variable V3–V4 region of the bacterial 16S rRNA gene and paired-end sequencing (2?×?300 cycles) on the Illumina MiSeq platform.
Sample: Skin of a patient affected by limited (ACA) sclerodermia [C_22_L]
SAMN27478835 • SRS12545952 • All experiments • All runs
Library:
Name: GSM6034962
Instrument: Illumina MiSeq
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Genomic DNA extraction with DNeasy PowerLyzer PowerSoil Kit (Qiagen, Hilden, Germany) Illumina 16S Metagenomic Sequencing Library Preparation protocol ( see https://emea.support.illumina.com)
Runs: 1 run, 107,391 spots, 63.4M bases, 33.6Mb
Run# of Spots# of BasesSizePublished
SRR18685984107,39163.4M33.6Mb2023-12-28

ID:
21169962

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