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SRX14774767: GSM6032100: Endometrium, r-70; Bos taurus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 23.7M spots, 7.1G bases, 2.1Gb downloads

External Id: GSM6032100_r1
Submitted by: Animal and Dairy Sciences, University of Wisconsin-Madison
Study: Concentrations of progesterone prior to luteolysis modulates the uterine luminal transcriptome in the subsequent cycle in cattle
show Abstracthide Abstract
Sex-steroids concentrations throughout the estrous cycle modulate endometrial function and fertility in cattle. The objective of this study was to compare the post-estrus endometrial transcriptome of cows that were exposed to contrasting pre-estrus concentrations of progesterone before they displayed estrus and ovulated spontaneously. We hypothesized that greater pre-estrus concentration of progesterone alters post-estrus endometrial function even after the display of estrus and spontaneous ovulation. Overall design: Bos indicus-influenced cross-bred beef cows exposed to either high (H) or low (L) pre-estrus concentrations of progesterone. On day -9, the cows assigned to the high progesterone treatment received a new CIDR and 2 mL GnRH i.m. while the cows assigned to low progesterone treatment received a CIDR used twice previously, 5 mL PGF2a i.m. and 2 mL GnRH i.m. Ovarian ultrasonography and blood collections were performed on d -9, d -2, d -0.5, d 0 (observed estrus), d 4, d 7, and d 14 for measurement of ovarian structures, progesterone, and estradiol. Luminal epithelial cells were collected using a cytology brush on d 4, d 7, and d 14 for RNA-sequencing analysis.
Sample: Endometrium, r-70
SAMN27401829 • SRS12534815 • All experiments • All runs
Organism: Bos taurus
Library:
Name: GSM6032100
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA extraction was performed using RNeasy Mini Kit (Qiagen, Valencia, CA). RNA concentration and quality were determined using spectrophotometry (NanoDrop 2000 Spectrophotometer, Thermo Fisher Scientific, Waltham, MA, USA) by absorbance at 260 nm and the 260/280 nm ratios, respectively. Absorbance ratios ranged from 1.8 to 2.1. All the RNA-sequencing procedures were performed by Novogene Bioinformatics Technology Co., Ltd (Beijing, China). Sequencing libraries were prepared using a Poly-A tail capture method and sequenced with NovaSeq 6000.
Runs: 1 run, 23.7M spots, 7.1G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR1867306523,710,9577.1G2.1Gb2022-04-13

ID:
21150015

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