GSM1969523: ZF_Uninjured_Hearts_2 (PG-2); Danio rerio; RNA-Seq - SRA

SRX1474053: GSM1969523: ZF_Uninjured_Hearts_2 (PG-2); Danio rerio; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 53.6M spots, 2.7G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)

Study: Modulation of tissue repair by regeneration enhancer elements.

PRJNA305621 • SRP067229 • All experiments • All runs

show Abstracthide Abstract

We compared transcriptional and chromatin profiles of regenerating zebrafish hearts following genetic ablation with profiles from uninjured zebrafish hearts. Overall design: Examination of whole heart transcriptional profiles from ablated hearts (2 pools of 10 hearts) and uninjured hearts (2 pools of 10 hearts). Examination of differential H3K27Ac marks following genetic ablation of cardiomyocytes (regenerating hearts) and uninjured hearts.

Sample: ZF_Uninjured_Hearts_2 (PG-2)

SAMN04330075 • SRS1200114 • All experiments • All runs

Organism: Danio rerio

Library:

Instrument: Illumina Genome Analyzer II

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Hearts were collected 7 days after treatment. 10 ventricles were dissected, rinsed in heparin, placed in Trizol and homogenized. RNA was then extracted. Illumina RNA-Seq, 50 bp Single end libraries

Experiment attributes:

GEO Accession: GSM1969523

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 53.6M spots, 2.7G bases, 1.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR3143916	53,631,701	2.7G	1.7Gb	2016-04-10

ID:: 2084395

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