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SRX14276753: GSM5915328: bicyclomycin treated Escherichia coli str. O157:H7 str. Sakai- replicate 2; Escherichia coli; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 26.6M spots, 4G bases, 1.5Gb downloads

External Id: GSM5915328_r1
Submitted by: Tree lab, School of Biotechnology and Biomolecular Sciences, University of New South Wales
Study: RNA-sequencing of bicyclomycin treated Escherichia coli str. O157:H7 str. Sakai
show Abstracthide Abstract
Enterohaemorrhagic E. coli (EHEC) is a significant human pathogens that cause outbreaks of haemorrhagic colitis and haemolytic uremic syndrome. During infection, pathogens compete for iron with the host, and one mechanism by which EHEC obtains iron is through haem uptake and utilitisation which is encoded by the chu operon. We have demonstrated that the haem receptor chuA is regulated by the Crp-cAMP-dependent sRNA CyaR. We further demonstrate that activation of chuA by CyaR is independent of the chuA RNA-thermometer and termination by Rho. These results highlight the ability of regulatory sRNAs to integrate multiple environmental signals into a layered hierarchy of signal input. Overall design: Detecting rho-dependent transcripts in Escherichia coli str. O157:H7 str. Sakai
Sample: bicyclomycin treated Escherichia coli str. O157:H7 str. Sakai- replicate 2
SAMN26226234 • SRS12094968 • All experiments • All runs
Library:
Name: GSM5915328
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using guanidinium thiocyanate phenol as in (Tollervery & Mattaj 1987) RNA was depleted with Zymo-seq RiboFree Total RNA kit before library prep for sequencing on the NextSeq paired end flow cell
Runs: 1 run, 26.6M spots, 4G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR1812866726,564,9694G1.5Gb2022-03-03

ID:
20234040

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