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SRX13691815: GSM5795737: GoatSkin19; Capra hircus; Bisulfite-Seq
1 ILLUMINA (HiSeq X Ten) run: 23.3M spots, 7G bases, 2.6Gb downloads

External Id: GSM5795737_r1
Submitted by: National Institute of Animal Nutrition and Physiology
Study: Assessing the productive and adaptive capability of two different goat breeds to heat stress based on differences in the phenotypic and genotypic traits
show Abstracthide Abstract
Assessing the adaptive capabilities of two indigenous Nandidurga and Bidri goat breeds based on skin epigenetics approach Overall design: Goats were raised in controlled environment and samples were collected and processed to generate methylome data.
Sample: GoatSkin19
SAMN24794085 • SRS11570827 • All experiments • All runs
Organism: Capra hircus
Library:
Name: GSM5795737
Instrument: HiSeq X Ten
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Skin tissue was chopped into fine pieces and lysed by adding Buffer ATL, ProteinaseK and Buffer AL. The lysate was bound to Dneasy Mini Spin Column and the DNA was eluted in Buffer AE after subsequent washes. (Dneasy® Blood& Tissue Kit Cat.No.69506) The purified gDNAwas bisulfite converted using Lightning Conversion Reagent and amplified with specific PreAmp primeres followed by Amplification with Library Amp Primers and Index primers. (Pico Methyl-Seq Library Prep Kit for Illumina-based sequencing; Cat.No. D5456-A)
Runs: 1 run, 23.3M spots, 7G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR1752176023,259,6227G2.6Gb2022-12-28

ID:
19050530

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