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SRX13549176: GSM5764257: Standard diet fed (12 weeks) Liver CD45+ cells_Mouse_001_Sample_003; Mus musculus; RNA-Seq
2 ILLUMINA (Illumina HiSeq 4000) runs: 242.4M spots, 30.1G bases, 14.2Gb downloads

Submitted by: NCBI (GEO)
Study: Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)
show Abstracthide Abstract
Analysis of CITE-seq data , Nuclei RNA-seq data and single cell RNA-seq data on CD45+ and CD45- cells isolated from the livers of mice fed a standard diet (SD) or western diet (WD; fat, cholesterol and sugar), from healthy and steatotic human livers, from hamster liver, pig liver, chicken liver, monkey liver and zebrafish liver. We also performed Spatial Transcriptomics analysis on heatlhy mouse livers, NAFLD mouse livers, healthy human livers and steatotic human livers. Overall design: Single cell RNA Seq = Liver CD45+ and CD45- cells derived from mice fed a standard diet (SD) or western diet (WD; fat, cholesterol and sugar). Liver CD45+ and CD45- cells derived from healthy and obese humans. 10,Visium,Spatial,Seq,=,mouse,StSt,liver,,mouse,StSt,capsule,,mouse,NAFLD,liver,,,human,non-steatotic,liver,,human,steatotic,liver
Sample: Standard diet fed (12 weeks) Liver CD45+ cells_Mouse_001_Sample_003
SAMN24495550 • SRS11442950 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: All Methods listed in Guilliams et al. Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches. Cell. 2022.
Experiment attributes:
GEO Accession: GSM5764257
Links:
Runs: 2 runs, 242.4M spots, 30.1G bases, 14.2Gb
Run# of Spots# of BasesSizePublished
SRR17374919211,579,67826.2G12.4Gb2022-01-12
SRR1737492030,830,2603.8G1.8Gb2022-01-12

ID:
18806310

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