U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX13458515: GSM5743108: 50 DPH female RA 5; Taeniopygia guttata; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 31.8M spots, 6.4G bases, 1.9Gb downloads

External Id: GSM5743108_r1
Submitted by: Behavioral Neuroscience, Oregon Health & Science University
Study: Emergence of sex-specific transcriptomes in a sexually-dimorphic brain nucleus
show Abstracthide Abstract
Sexual dimorphisms in the brain give rise to sex differences in physiology and behavior, yet we have limited understanding of the transcriptomic changes underlying their development. We evaluated developmental transcriptome dynamics for one of the most extreme neuroanatomical sexual dimorphisms in vertebrates - the songbird robust nucleus of the arcopallium (RA). RA is the telencephalic motor output nucleus of the song system. It grows monomorphically for the first few weeks posthatch, then continues growing in males but regresses in females, becoming 5-7 times larger in males. We quantified RA gene expression from monomorphic and dimorphic stages of development in both sexes. Mirroring the morphology, male and female transcriptomes initially resembled one other, then diverged markedly. Thousands of genes showed developmental regulation, corresponding to highly sex-specific biological processes. Males showed enrichments for neuronal growth and morphogenesis, synapse organization, metabolism, and voltage-gated ion channels. Females showed enrichments for cell polarity and differentiation, chemotaxis inhibition, gene silencing, and hormone and immune signaling. Notably, the majority of sex-biased genes in monomorphic RA were sex chromosome Z genes. These findings reveal a profound, sex-specific reorganization of RA's transcriptome, providing novel insights into potential targets and drivers of sexually dimorphic neurodevelopment. Overall design: mRNA profiles of brain nucleus RA from 20 DPH and 50 DPH male and female zebra finches
Sample: 50 DPH female RA 5
SAMN24250495 • SRS11356372 • All experiments • All runs
Library:
Name: GSM5743108
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Brains were removed, flash frozen in a slurry of dry ice and isopropanol, cryosectioned onto PEN membrane glass slides (Leica, No. 11505158), fixed in 100% cold ethanol, and stained using cresyl violet. Brain nucleus RA was extracted from PEN slides into RLT buffer (Qiagen) using laser capture microdissection (Leica LMD 6500). RNA was isolated using the RNeasy Micro Kit (Qiagen) with on-column DNase digestion. Using the SmartSeq v4 PLUS Kit (Takara Bio USA), cDNAs were generated from 1 ng total RNA , then the resulting cDNA was bioanalyzed on a High Sensitivity DNA chip, and 5 ng was used as input for the libraries.
Runs: 1 run, 31.8M spots, 6.4G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1728098731,811,5156.4G1.9Gb2022-07-14

ID:
18644029

Supplemental Content

Search details

See more...

Recent activity