GSM5742992: bairdii_prairie_late_04; Peromyscus maniculatus bairdii; ... - SRA

SRX13456633: GSM5742992: bairdii_prairie_late_04; Peromyscus maniculatus bairdii; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 9.1M spots, 2.7G bases, 1.3Gb downloads

External Id: GSM5742992_r1

Submitted by: Harvard Medical School

Study: RNA-seq profiling of tissue from deer mouse embryo tails

PRJNA790846 • SRP351651 • All experiments • All runs

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We used RNA-seq to compare transcriptional profiles from the embryonic tails from E12.5–E15.5 Peromyscus maniculatus. Samples are from two ecotypes, forest (P.m.nubiterrae) and prairie (P.m.bairdii) with different numbers of caudal vertebrae. Overall design: Embryonic tail RNA expression profiles from E12.5–E15.5 P. m. nubiterrae (n = 18) and P. m. bairdii (n = 17)

Sample: bairdii_prairie_late_04

SAMN24247572 • SRS11354490 • All experiments • All runs

Organism: Peromyscus maniculatus bairdii

Library:

Name: GSM5742992

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: We extracted total RNA using the PicoPure RNA Isolation kit (ThermoFisher Scientific). We constructed libraries using a PrepX PolyA kit on an Apollo 324 System

Runs: 2 runs, 9.1M spots, 2.7G bases, 1.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR17278993	4,535,423	1.4G	663.7Mb	2023-06-01
SRR17278994	4,599,346	1.4G	673.6Mb	2023-06-01

ID:: 18642147

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