GSM5742963: nubiterrae_forest_early_04; Peromyscus maniculatus nubite... - SRA

SRX13456604: GSM5742963: nubiterrae_forest_early_04; Peromyscus maniculatus nubiterrae; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 6.5M spots, 1.9G bases, 947.9Mb downloads

External Id: GSM5742963_r1

Submitted by: Harvard Medical School

Study: RNA-seq profiling of tissue from deer mouse embryo tails

PRJNA790846 • SRP351651 • All experiments • All runs

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We used RNA-seq to compare transcriptional profiles from the embryonic tails from E12.5–E15.5 Peromyscus maniculatus. Samples are from two ecotypes, forest (P.m.nubiterrae) and prairie (P.m.bairdii) with different numbers of caudal vertebrae. Overall design: Embryonic tail RNA expression profiles from E12.5–E15.5 P. m. nubiterrae (n = 18) and P. m. bairdii (n = 17)

Sample: nubiterrae_forest_early_04

SAMN24247601 • SRS11354460 • All experiments • All runs

Organism: Peromyscus maniculatus nubiterrae

Library:

Name: GSM5742963

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: We extracted total RNA using the PicoPure RNA Isolation kit (ThermoFisher Scientific). We constructed libraries using a PrepX PolyA kit on an Apollo 324 System

Runs: 2 runs, 6.5M spots, 1.9G bases, 947.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR17279051	3,205,108	961.5M	470.2Mb	2023-06-01
SRR17279052	3,254,062	976.2M	477.7Mb	2023-06-01

ID:: 18642118

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