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SRX13395460: GSM5730988: Nfr Liver Young WT Full M smp45; Nothobranchius furzeri; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 33.9M spots, 2.5G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Genetic perturbation of AMP biosynthesis extends lifespan and restores metabolic health in a naturally short-lived vertebrate
show Abstracthide Abstract
During aging, the loss of metabolic homeostasis drives a myriad of pathologies. A central regulator of cellular energy, the AMP-activated protein kinase (AMPK), orchestrates organismal metabolism. However, direct genetic manipulations of the AMPK complex in mice have, so far, produced detrimental phenotypes. Here, as an alternative approach, we alter energy homeostasis by manipulating the upstream nucleotide pool. Using the turquoise killifish, we mutate APRT, a key enzyme in AMP biosynthesis, and extend the lifespan of heterozygous males. Next, applying an integrated omics approach identify that metabolic functions are rejuvenated in old mutants, which also display a fasting-like metabolic profile and resistance to high-fat diet. On the cellular level, heterozygous cells exhibit enhanced nutrient sensitivity, reduced ATP levels, and AMPK ¬activation. Finally, lifelong intermittent fasting abolishes the longevity benefits. Our findings suggest that perturbing AMP biosynthesis may modulate vertebrate lifespan, and propose APRT as a promising target for promoting metabolic health. Overall design: Samples of livers and muscle of the Nothobranchius furzeri at different experimental conditions, including Age: 6.5 weeks-old (young) and 15 weeks-old (old); Genotype: wild-type (WT) and APRT heterozygous (Het); Feeding condition: fully fed (full) and starved 24h (fasted); and Sex: males (M) and females (F). The muscles and livers were extracted from the same fish.
Sample: Nfr Liver Young WT Full M smp45
SAMN23970508 • SRS11298620 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Samples were disrupted by bead beating in 300μl of TriZol (Sigma) and a single 3mm metal bead (Eldan, BL6693003000) using TissueLyzer LT (QIAGEN, #85600) with a dedicated adaptor (QIAGEN, #69980). Beating was performed twice at 50Hz for 2 minutes. RNA extraction was performed with Direct-zol RNA Purification Kits (Zymo). RNA concentration and quality were determined by using an Agilent 2100 bioanalyser (Agilent Technologies). Library preparation was performed using KAPA mRNA HyperPrep Kit (ROCHE-08105936001) according to the recommended protocols. Library concentrations were measured by Qubit (dsDNA HS, Q32854), and quality was measured by Tape Station (HS, 5067-5584). Libraries were sequenced by NextSeq 500 high output kit V2, 75 cycle single-end (Illumina, 20024906) using a NextSeq 500 machine (Illumina) with ~30 million reads per sample.
Experiment attributes:
GEO Accession: GSM5730988
Links:
Runs: 1 run, 33.9M spots, 2.5G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR1721565333,865,2532.5G1.1Gb2023-05-23

ID:
18480297

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