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SRX13321544: GSM5718384: ht_Saline_rep06_batchB; Rattus norvegicus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 34.8M spots, 2.6G bases, 1,011.8Mb downloads

External Id: GSM5718384_r1
Submitted by: Raum D15.02.045, Core Unit SysMed, University of Wuerzburg
Study: Roux-en-Y gastric bypass and caloric restriction but not gut hormone-based treatments profoundly impact the hypothalamic transcriptome in obese rats
show Abstracthide Abstract
Background: The hypothalamus is an important brain region for the regulation of energy balance. Roux-en-Y gastric bypass (RYGB) surgery and gut hormone-based treatments are known to reduce body weight, but their effects on hypothalamic gene expression and signaling pathways are poorly studied. Methods: Diet-induced obese male Wistar rats were randomized into the following groups: RYGB, sham-operation, sham + body weight-matched (BWM) to the RYGB group, osmotic minipump delivering PYY3-36 (0.1mg/kg/day), liraglutide s.c. (0.4mg/kg/day), PYY3-36+liraglutide and saline. All groups (except BWM) were kept on a free choice of high- and low-fat diets. Four weeks after interventions, hypothalami were collected for RNA-sequencing. Results: While rats in the RYGB, BWM and PYY3-36+liraglutide groups had comparable reductions in body weight, only RYGB and BWM treatment had a major impact on hypothalamic gene expression. In these groups, hypothalamic leptin receptor expression as well as the JAK–STAT, PI3K-Akt and AMPK signaling pathways were upregulated. No significant changes could be detected in PYY3-36+liraglutide, liraglutide and PYY treated groups. Conclusions: Despite causing similar body weight changes compared to RYGB and BWM, PYY3-36+liraglutide treatment does not impact hypothalamic gene expression. Whether this striking difference is favorable or unfavorable to metabolic health in the long term requires further investigation. Overall design: Examination of hypothalamic changes of mRNA in different treatment groups in male Wistar rats
Sample: ht_Saline_rep06_batchB
SAMN23668727 • SRS11229304 • All experiments • All runs
Library:
Name: GSM5718384
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Using a microscope with an attached freezing plate, hypothalami were removed from the brains and frozen on dry ice in Eppendorf tubes immediately. Tissue was homogenized using QIAGEN Tissue Lyser II (85300; QIAGEN) and further purified using Proteinase K (PK) Solution (MC5005; Promega). Prior to extraction, RNA integrity and concentration were tested using NanoDrop™ 2000c spectrophotometer (Thermo Fisher Scientific). In the following step, mRNA was extracted using Promega's “Maxwell SimplyRNA Tissue Kit” (AS1340). RNA quality was checked using a 2100 Bioanalyzer with the RNA 6000 Nano kit (Agilent Technologies). The RIN for all samples was >7.2. DNA libraries suitable for sequencing were prepared from 100 ng of total RNA with oligo-dT capture beads for poly-A-mRNA enrichment using the TruSeq Stranded mRNA Library Preparation Kit (Illumina) according to manufacturer's instructions. After 15 cycles of PCR amplification, the size distribution of the barcoded DNA libraries was estimated ~285/335 bp (batch A/batch B) by electrophoresis on Agilent DNA 1000 Bioanalyzer microfluidic chips.
Runs: 1 run, 34.8M spots, 2.6G bases, 1,011.8Mb
Run# of Spots# of BasesSizePublished
SRR1713707634,847,6142.6G1,011.8Mb2022-01-14

ID:
18249822

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