U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1292950: GSM1896734: Het (Q20) 6 months Female Hippocampus miRNA rep3; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 6.8M spots, 153.8M bases, 110.4Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Transcriptome profiling in knock-in mouse models of Huntington''s disease [Hippocampus_miRNA]
show Abstracthide Abstract
Huntington''s disease (HD) is an autosomal dominant neurodegenerative disorder that is characterized by motor, cognitive, and psychiatric alterations. The mutation responsible for this disease is an abnormally expanded and unstable CAG repeat within the coding region of the gene encoding huntingtin (Htt). Knock-in mouse models of HD with human exon 1 containing expanded CAG repeats inserted in the murine huntingtin gene (Hdh) provide a genetic reconstruction of the human causative mutation within the mouse model. The goal of this study is RNA expression profiling by RNA sequencing (RNA-seq) in 2, 6, and 10 month old knock-in mice with CAG lengths of 20, 80, 92, 111, 140, 175 along with littermate control wild-type animals. Overall design: miRNA expression profiles were obtained via RNA-seq analysis performed on tissue samples from the hippocampus of 2, 6, and 10 month old knock-in mice with CAG lengths of 20, 80, 92, 111, 140, 175 along with littermate control wild-type animals.
Sample: Het (Q20) 6 months Female Hippocampus miRNA rep3
SAMN04116430 • SRS1092282 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Tissue specimens were removed, flash frozen on dry ice, and total RNA was harvested using the Qiagen miRNeasy kit. RNA quality and integrity were monitored via Agilent Bioanalyzer. A minimum of 3.75 ug of total RNA were used to collect enriched RNA subfractions for library construction. RNA libraries were prepared for sequencing using standard Illumina protocols.
Experiment attributes:
GEO Accession: GSM1896734
Links:
Runs: 1 run, 6.8M spots, 153.8M bases, 110.4Mb
Run# of Spots# of BasesSizePublished
SRR25318736,840,076153.8M110.4Mb2015-11-03

ID:
1848073

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...