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SRX12597634: GSM5625142: Null_Root_50DAS_LP_3; Triticum aestivum; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 48.5M spots, 3.7G bases, 1.2Gb downloads

External Id: GSM5625142_r1
Submitted by: Department of Botany and Plant Sciences, UC Riverside
Study: OsPSTOL1 is prevalent in upland rice and enhances root growth and phosphate sufficiency in wheat
show Abstracthide Abstract
Improvement of phosphorus (P) uptake by crops is a prerequisite for sustainable agriculture. Rice (Oryza sativa L.) PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) increases root growth and total P uptake. Here, a biogeographic survey of rice demonstrates OsPSTOL1 loss in a subset of japonica rice after the temperate-tropical split and frequent absence in paddy varieties of east Asia. OsPSTOL1 absence or loss-of-function alleles prevail in landraces from regions with fertilizer use and controlled irrigation, suggesting it is an adaptive genetic variant in low nutrient rainfed ecosystems. OsPSTOL1 is a truncated member of a family of multi-module kinases associated with microbial interactions. We demonstrate that ectopic expression of OsPSTOL1 in wheat (Triticum aestivum L.) increases shoot and root growth under low P conditions, promotes root plasticity, and hastens induction of the low P response pathway. OsPSTOL1's influence on adaptive root development in wheat validates its potential for broad utilization in crop improvement. Overall design: Two independent transgenic lines ectopically ovexpressing OsPSTOL1 (PSTOL1.1 and PSTOL1.2) and their null segregants (Null) were grown under high (HP) and low (LP). phosphate conditions. Tissues from whole roots and crowns were sampled at 36 (E) and 50 (L) days after sowing (DAS).
Sample: Null_Root_50DAS_LP_3
SAMN22251054 • SRS10552872 • All experiments • All runs
Library:
Name: GSM5625142
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using TRizol reagent (Invitrogen) according to the manufacturer's instructions. Following quantitation with a NanoDrop (Wilmington, DE), 15 µg of total-RNA was used to isolate mRNA using Dynabeads™ Oligo(dT)25 (Invitrogen) following the manufacture's instructions. mRNA-seq Libraries were produced using the non-strand specific Brad's Rapid Ravi-seq procedure (Kumar et al. 2012).
Runs: 1 run, 48.5M spots, 3.7G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1631979848,511,5983.7G1.2Gb2023-08-30

ID:
17101078

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