GSM5617426: 249_rep2; Cenchrus americanus; RNA-Seq - SRA

SRX12515399: GSM5617426: 249_rep2; Cenchrus americanus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 76.7M spots, 3.8G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)

Study: Comparison of the root tip transcriptome of 2 pearl millet lines with contrasted primary root growth

PRJNA769415 • SRP340403 • All experiments • All runs

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We analysed global gene expression in the primary root tip of 2 pearl millet (Pennisetum glaucum) inbred lines with high (line 249) and low (line 337) primary root growth using RNAseq. The objective was to identify genes potentially associated with changes in root growth. Overall design: Two pearl millet lines with contrasted root soil aggregation were grown in hydropony for 15 days. 3 biological replicates were produced per line. RNA was extracted from the primary root tip (2 cm apex). RNA-seq was performed by the Montpellier GenomiX Platform (MGX, https://www.mgx.cnrs.fr/). Sequencing was performed on an Illumina HiSeq 2500.

Sample: 249_rep2

SAMN22133037 • SRS10477147 • All experiments • All runs

Organism: Cenchrus americanus

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA were extracted using the RNeasy kit (Qiagen). Libraries were constructed with the TruSeq Stranded mRNA Sample Preparation (Illumina).

Experiment attributes:

GEO Accession: GSM5617426

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 76.7M spots, 3.8G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR16235516	76,672,291	3.8G	1.5Gb	2021-10-11

ID:: 16970536

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Sequence Read Archive

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