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SRX12391698: GSM5602457: THAP1+/- SHSY5Y Rep2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 29.6M spots, 3G bases, 881.3Mb downloads

External Id: GSM5602457_r1
Submitted by: Institute of Medical Genetics and Applied Genomics, University of Tuebingen
Study: THAP1 is cell type dependent regulator of SP1 family crucial for dystonic syndromes in human and rat [SHSY5Y_RNA-seq]
show Abstracthide Abstract
THAP1 is a transcription factor and its mutations are responsible for DYT6 dystonia. However, how THAP1 mutations lead to these gene expression alterations and whether the gene expression changes are also reflected in the brain of THAP1 patients are still unclear. In this study we used epigenetic and transcriptomic approaches combined with multiple model systems to uncover the function of THAP1 and the potential pathogenesis of DYT6 dystonia. THAP1 mutations lead to dysregulation of genes mainly through regulation of SP1 family members, SP1 and SP4, in a cell type dependent manner. Overall design: RNA-seq analysis of wild-type and THAP1 heterozygous knock-out SHSY5Y cells
Sample: THAP1+/- SHSY5Y Rep2
SAMN21889471 • SRS10361599 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM5602457
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using RNeasy mini kit (Qiagen) Libraries were generated using NEBNext Ultra II Directional RNA library Preparation Kit for Illumina (NEB, #E7760L)
Runs: 1 run, 29.6M spots, 3G bases, 881.3Mb
Run# of Spots# of BasesSizePublished
SRR1610612029,556,7793G881.3Mb2022-09-28

ID:
16702658

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