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SRX11809411: GSM5527491: LW50 H2BKO A; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 8.7M spots, 444.4M bases, 169.7Mb downloads

Submitted by: NCBI (GEO)
Study: Epithelial XBP1 coordinates TP53-driven DNA damage responses and suppression of intestinal carcinogenesis
show Abstracthide Abstract
We assessed the impact of intestinal epithelial XBP1 in coordinating epithelial DNA damage responses. As our data revealed that low XBP1 activity in the context of chronic DNA damage is associated with both reduced p53 pathway activity and formation of tumors with metastaic potential in-vivo, we performed RNA sequencing of intestinal organoids (H2b/Xbp1fl/fl, H2b?IEC, H2b/Xbp1?IEC, H2b/p53?IEC) to identify a transcriptional program downstream of p53 that drives the tumorigenic in-vivo phenotype. Overall design: Examination of Differentially Expressed Genes between small intestinal organoids derived from healthy tissue of 8-12 weeks old mice (n = 3) of indicated genotypes.
Sample: LW50 H2BKO A
SAMN20848396 • SRS9824147 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Organoids were washed in PBS and RNA was extracted following the RNeasy Kit (Qiagen) according to manufacturer's protocol. RNA libraries were prepared using TruSeq stranded mRNA Kit (Illumina) according to manufacturer's instructions. All samples were sequenced using an Illumina HiSeq 4000 with single-end sequencing of 50bp reads
Experiment attributes:
GEO Accession: GSM5527491
Links:
Runs: 1 run, 8.7M spots, 444.4M bases, 169.7Mb
Run# of Spots# of BasesSizePublished
SRR155105318,714,665444.4M169.7Mb2021-09-02

ID:
15726346

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