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SRX11644657: GSM5501861: BMR2_Kidney_S49; Nannospalax ehrenbergi; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 131.8M spots, 39.6G bases, 11.6Gb downloads

Submitted by: NCBI (GEO)
Study: Transposon-triggered innate immune response confers cancer resistance to the blind mole rat [seq]
show Abstracthide Abstract
Blind mole rats (BMRs) are small rodents, characterized by exceptionally long lifespan (> 21 years) and resistance to both spontaneous and induced tumorigenesis. Here we report that cancer resistance in the BMR is mediated by retrotransposable elements (RTEs). BMR cells and tissues express very low levels of DNA methyltransferase 1 (DNMT1). Upon cell hyperplasia, the BMR genome DNA loses methylation, resulting in activation of RTEs. Up-regulated RTEs form cytoplasmic RNA/DNA hybrids, which activate cGAS-STING pathway to induce cell death. Although this mechanism is enhanced in the BMR, we show that it functions in mice and human. We propose that RTEs were coopted to serve as tumor suppressors that monitor cell proliferation and are activated in premalignant cells to trigger cell death via activation of innate immune response. RTEs activation is a double-edged sword, serving as a tumor suppressor but in late life contributing to aging via induction of sterile inflammation. Overall design: RNA sequencing comparing genes and transposons expression between young and old fibroblasts of blind mole rat, as well as different tissues between blind mole rats and mice; MeDIP comparing methylation between young and old fibroblasts of blind mole rat.
Sample: BMR2_Kidney_S49
SAMN20558530 • SRS9678233 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For RNAseq, was extracted using a Quick-RNA MiniPrep Kit (Zymo), with a DNase I on column digestion to remove genomic DNA contamination; For MeDIP, genomic DNA was extracted using a Zymo Quick-DNA Miniprep Plus Kit. For RNAseq, the RNA samples were processed with the Illumina TruSeq stranded total RNA RiboZero Gold kit and then subjected to Illumina HiSeq 4000 paired-end 150bp sequencing; For MeDIP, genomic DNA samples were processed using the NEBNext UltraII DNA Library Prep kit.
Experiment attributes:
GEO Accession: GSM5501861
Links:
Runs: 1 run, 131.8M spots, 39.6G bases, 11.6Gb
Run# of Spots# of BasesSizePublished
SRR15340414131,846,23239.6G11.6Gb2021-09-10

ID:
15560034

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