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SRX115580: GSM861784: miRNA_GFP_minus; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer) run: 8.2M spots, 295M bases, 218.1Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: miR-221 is required for endothelial tip cell behaviors during vascular development
show Abstracthide Abstract
Through deep sequencing and functional screening in zebrafish, we find that miR-221 is essential for angiogenesis. miR-221 knockdown phenocopied defects associated with loss of the tip cell-expressed Flt4 receptor. Furthermore, miR-221 was required for tip cell proliferation and migration, as well as tip cell potential in mosaic blood vessels. miR-221 knockdown also prevented “hyper-angiogenesis” defects associated with Notch deficiency and miR-221 expression was inhibited by Notch signaling. Finally, miR-221 promoted tip cell behavior through repression of two targets: cyclin-dependent kinase inhibitor 1b (cdkn1b) and phosphoinositide-3-kinase regulatory subunit 1 (pik3r1). These results identify miR-221 as an important regulatory node through which tip cell migration and proliferation are controlled during angiogenesis. Overall design: Identification of endothelial-expressed microRNA from FACS-isolated zebrafish endothelial cells.
Sample: miRNA_GFP_minus
SAMN00773055 • SRS285697 • All experiments • All runs
Organism: Danio rerio
Library:
Name: GSM861784: miRNA_GFP_minus
Instrument: Illumina Genome Analyzer
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Spot descriptor:
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Experiment attributes:
GEO Accession: GSM861784
Links:
External link:
Runs: 1 run, 8.2M spots, 295M bases, 218.1Mb
Run# of Spots# of BasesSizePublished
SRR3983228,195,037295M218.1Mb2012-02-28

ID:
133375

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