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SRX11503853: GSM5462673: 3D7_AP2-06A-KD(-)GlcN_T_RNA-seq, Rep1; Plasmodium falciparum; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 23.9M spots, 7.2G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Roles of PfAP2-EXP2 in Plasmodium falciparum blood-stage development [RNA-seq]
show Abstracthide Abstract
Effects of PfAP2-EXP2 knockdown on gene expression at the ring, trophozoite, and schizont stages Overall design: RNA-seq for the AP2-EXP2-KD parasite line treated with or without glucosamine (GlcN) at the ring (10–15 hpi), trophozoite (25–30 hpi), and schizont (40–45 hpi) stages, respectively
Sample: 3D7_AP2-EXP2-KD(-)GlcN_T_RNA-seq, Rep1
SAMN20322102 • SRS9542516 • All experiments • All runs
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Highly synchronous parasites were collected in TRIzol at the ring (10–15 hpi), trophozoite (25–30 hpi), and schizont (40–45 hpi) stages from the next cycle, respectively. Total RNA purification was conducted with the Direct-zol RNA Kit (Zymo Research). Libraries were prepared for strand-specific RNA sequencing by poly(A) selection with the KAPA mRNA Capture Beads (KAPA Biosystems) first and then RNA fragmentation to a size of 300–400 nucleotides. Subsequent library preparation steps followed the protocol of the KAPA Stranded mRNA-Seq Kit Illumina platform (KAPA Biosystems, KK8421).
Experiment attributes:
GEO Accession: GSM5462673
Links:
Runs: 1 run, 23.9M spots, 7.2G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR1519729123,937,7747.2G2.3Gb2022-02-15

ID:
15415731

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