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SRX11475672: GSM5456235: M2_WT_Input_S17; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 25.8M spots, 7.7G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: Germ-cell specific eIF4E1b regulates maternal mRNA translation to ensure zygotic genome activation [RIP-seq]
show Abstracthide Abstract
Translation of maternal mRNAs is detected before transcription of zygotic genes and is essential for mammalian embryo development. How certain maternal mRNAs are selected for translation instead of degradation and how this burst of translation affects zygotic genome activation remains unknown. Using gene-edited mice, we document that the oocyte-specific eukaryotic translation initiation factor 4E family member 1b (eIF4E1b) is the regulator of maternal mRNA expression that ensures subsequent reprogramming of the zygotic genome. In oocytes, eIF4E1b binds to transcripts encoding translation machinery proteins, chromatin remodelers and reprogramming factors to promote their translation in zygotes and protect them from degradation. The protein products are thought to establish an open chromatin landscape in one-cell zygotes to enable transcription of genes required for cleavage stage development. Our results define a program for rapid resetting of the zygotic epigenome that is regulated by maternal mRNA expression and provides new insights into the mammalian maternal-to-zygotic transition. Overall design: RNA profiles after IP with anti-HA beads using M2 eggs or early 2-cell embryos collected from Eif4e1b FLAGHA knock-in(KI) females or WT controls.
Sample: M2_WT_Input_S17
SAMN20253230 • SRS9516598 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: 200-250 M2 eggs or early 2-cell embryos were collected from Eif4e1b with C terminal FLAGHA knock-in female or WT female mice as one sample. After removing the zona pellucida, washed with PBS, embryos for a same sample were transferred into a 1 ml nuclease free centrifuge tube with a minimal volume of PBS. EZ-Manga RIP kit and anti-HA beads were used to perform RIP experiment. RNA in supernatant after IP was purified with RNAclean XP beads and used as input. Smart-Seq2 protocol was used to process RNA bound by anti-HA bead or RNAclean XP beads and finally finish the RNA-Seq libraries.
Experiment attributes:
GEO Accession: GSM5456235
Links:
Runs: 1 run, 25.8M spots, 7.7G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR1516832025,810,7467.7G2.8Gb2023-06-08

ID:
15343478

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