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SRX11361543: GSM5420493: Zygote.IgG.Input.RNAseq.rep1; Mus musculus; RIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 45.2M spots, 13.6G bases, 4Gb downloads

Submitted by: NCBI (GEO)
Study: Non-equilibrium pronucleus histones require gametal factor Lsm1 induced major satellite RNA decay
show Abstracthide Abstract
The development of a multicellular organism with various organs and tissues is a complex but highly concerted process, in which cells acquire different identities through exquisite spatiotemporal regulations called cell fate decision. Here, we Lsm1 targets non-coding major satellite RNAs in mouse zygote, which is required for the non-equilibrium epigenetic modification, especially H3K9me3 establishment during early embryo development. Overall design: We performed RNAseq experiment on mouse zygotes with and without Lsm1 knockdown. We also performed RIP-seq on FLAG-Tagged LSM1, using NO-Tagged LSM1 as control.
Sample: Zygote.IgG.Input.RNAseq.rep1
SAMN20081367 • SRS9407898 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RIP-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: For Lsm1 knockdown zyogtes, RNA was harvested using Trizol reagent. For RIP-seq zygotes, Protein-RNA complex were isolated by ANTI-FLAG® M2 Affinity Gel, then RNA was harvested using Trizol reagent. For Lsm1 knockdown zyogtes, RNA libraries were prepared for sequencing using KAPA Stranded RNA-Seq Kit with RiboErase (HMR) (KapaBiosystems, Cat. Nos.KK8483); For RIP-seq zygotes, RNA libraries were prepared for sequencing using SMARTer Stranded Total RNA-Seq Kit v2 (Takara, Cat. Nos. 635005)
Experiment attributes:
GEO Accession: GSM5420493
Links:
Runs: 1 run, 45.2M spots, 13.6G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR1505112445,179,35713.6G4Gb2022-07-06

ID:
15181859

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