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SRX11360095: GSM5419870: Denatured_SP-D_3; Vibrio cholerae H1; RNA-Seq
1 ILLUMINA (NextSeq 550) run: 21.7M spots, 1.5G bases, 607.8Mb downloads

Submitted by: NCBI (GEO)
Study: Proteomic analysis of the pathogen surface in cholera identifies host proteins involved in defense and microbiota recognition [II]
show Abstracthide Abstract
The microbial cell surface is a critical site of microbe-host interactions that often control infection outcomes. Defining the set of host proteins present at this interface has been challenging. Here, we used a surface biotinylation approach coupled to quantitative mass spectrometry to identify and quantify both bacterial and host proteins present on the surface of diarrheal fluid-derived V. cholerae in an infant rabbit model of cholera. Our data showed that V. cholerae surfaces were coated with numerous host proteins, whose abundance were driven by the presence of cholera toxin, including the C type lectin SP-D. Mice lacking SP-D had enhanced V. cholerae intestinal colonization. Additional host proteins (AnxA1, LPO and ZAG) capable of binding V. cholerae were also found to recognize distinct taxa of the murine intestinal microbiota, suggesting that these host factors may play roles in intestinal homeostasis in addition to host defense. Proteomic analysis of microbial surfaces is valuable for identifying host interactions that regulate infection and homeostasis with both pathogens and endogenous microbiota alike. Overall design: We performed RNAseq on V. cholerae in vitro in presence of SP-D or denatured SP-D.
Sample: Denatured_SP-D_3
SAMN20080061 • SRS9406458 • All experiments • All runs
Library:
Instrument: NextSeq 550
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA were harvested and preserved using Trizol reagent. Total RNA was extracted using the RNeasy mini kit (Qiagen). Migs center.
Experiment attributes:
GEO Accession: GSM5419870
Links:
Runs: 1 run, 21.7M spots, 1.5G bases, 607.8Mb
Run# of Spots# of BasesSizePublished
SRR1504967221,678,0961.5G607.8Mb2021-07-17

ID:
15180411

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