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SRX11328039: GSM5413761: post-pharyngeal fragments, bmp_6h_1; Schmidtea mediterranea; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 25.7M spots, 1.3G bases, 529.3Mb downloads

Submitted by: NCBI (GEO)
Study: bmp4 RNAi gene expression profiling
show Abstracthide Abstract
Regeneration is a widespread phenomenon that often requires formation of a new tissue outgrowth at wounds called a blastema. Identifying the key signals that trigger blastema formation is therefore fundamental for understanding the mechanistic basis of regeneration. We uncovered a role for the wound epidermis in regeneration initiation in planarians. The gene equinox is expressed within hours of injury in the planarian wound epidermis and encodes a secreted protein conserved in many phyla. Following equinox inhibition, animals failed to form blastemas, reset positional information, and upregulate stem cell (neoblast) proliferation at wounds. Associated with these defects was an inability to maintain wound-induced gene expression. We propose that activation of equinox in the wound epidermis initiates planarian regeneration. Overall design: Polyadenylated RNA was isolated from post-pharyngeal fragments at 0, 3, 6, 16, 24, and 48 hours post-amputation (hpa) from planarians following RNAi of a control gene (C.elegans unc-22; 5 replicates) and bmp4 (5 replicates). Worms were fed four times over two weeks, and cut 7 days after 4th feeding.
Sample: post-pharyngeal fragments, bmp_6h_1
SAMN19992369 • SRS9364289 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA extracted from anterior facing wound fragments with 750 uL of TriZOL reagent with 5 wounds per replicate. Quantified by Qubit and Agilent Bioanalyser. KapaHyper mRNA-Seq Kit Illumina Platform (KapaBiosystems)
Experiment attributes:
GEO Accession: GSM5413761
Links:
Runs: 1 run, 25.7M spots, 1.3G bases, 529.3Mb
Run# of Spots# of BasesSizePublished
SRR1501611825,672,2951.3G529.3Mb2021-09-05

ID:
15103325

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