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SRX11234304: GSM5402427: IBUN13A Gly3; Clostridium sp. IBUN13A; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 105.1M spots, 21.2G bases, 8.8Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic insights of a 1,3-Propanediol producer Clostridium strain isolated from Colombian soil
show Abstracthide Abstract
The possibility of establishing a Clostridium-based biorefinery is an attractive and viable alternative, due to the wide metabolic versatility of these microorganisms. The Bioprocesses and Bioprospecting group of the Universidad Nacional de Colombia has obtained the genome of Clostridium sp. IBUN13A, which has shown the ability to produce solvents from various substrates and postulated the need to expand the knowledge of the physiology of the bacteria, so, this study establishes the differences in the transcriptomic profile of the strain when it is cultivated in glycerol respect to glucose after 24 hours of fermentation. For this, a RNA-seq study was carried out, and some of the genes that increased its expression on glycerol were related to the oxidative route of its consumption. The enrichment analysis of Gene Ontology terms showed that the biological phenomena with the highest representation within the differentially expressed genes correspond to oxidation-reduction processes. This first approach to the global transcriptomic study of glycerol fermentation allows the understanding of the metabolism of the microorganism with the purpose of choosing targets for genetic modification. Overall design: Comparison of expression between glycerol and glucose consumption on a Clostridium butyricum strain
Sample: IBUN13A Gly3
SAMN19895499 • SRS9280270 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Pellets from 40 mL culture vessels were collected and the procedures from TRIzol® Max™ Bacterial RNA Isolation Kit and RNeasy Protect Bacteria Mini Kit de Qiagen ® were followed RNA libraries were prepared for sequencing using standard Illumina protocols for Illumina TruSeq stranded mRNA (microbe)
Experiment attributes:
GEO Accession: GSM5402427
Links:
Runs: 1 run, 105.1M spots, 21.2G bases, 8.8Gb
Run# of Spots# of BasesSizePublished
SRR14920998105,097,90021.2G8.8Gb2021-06-28

ID:
15001540

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