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SRX11075082: GSM5360230: 6289_10_10_ACTTGAA_S73; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 19.8M spots, 1.3G bases, 585.2Mb downloads

Submitted by: NCBI (GEO)
Study: Decreased serine biosynthesis identifies a subgroup of platinum resistant ovarian cancers and novel actionable metabolic vulnerabilities
show Abstracthide Abstract
Resistance to platinum-based chemotherapy represents a major clinical challenge for many tumors, particularly epithelial ovarian cancer. After initial response, patients often experience several response-relapse events, until tumors start to resist the treatment. Resistant patients have low response rate to other chemotherapy regimens, with life expectancy of 12-15 months. Despite improved knowledge of the molecular determinants of platinum resistance, the lack of clinical applicability limits exploitation of many potential targets, and no novel drugs have been approved for resistant disease. By investigating the functional link between metabolic adaptations and resistance, we discovered that resistant cells modify their serine metabolism and acquire a specific NAD+ generating phenotype, which allows them to sustain PARP activity under treatment. Our findings reveal a novel metabolic vulnerability of resistant tumors that might have an immediate clinical implication, showing that ex vivo patient derived resistant models can be re-sensitized to platinum by combining it with PARP inhibition. Overall design: RNA sequencing of A2780 and cisplatin-resistant A2780 cells.
Sample: 6289_10_10_ACTTGAA_S73
SAMN19580513 • SRS9141126 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: 5x10^6 cells per condition per replicate were lysed using RLT buffer (Qiagen) and stored at -80°C. For the generation of total RNA libraries, total RNA was extracted using TRI Reagent (SIGMA), and mRNA was purified using Dynabeads mRNA DIRECT Purification Kit (Invitrogen), according to the manufacturers' protocol. Total RNA libraries were constructed using SENSE Total RNA-Seq Library Prep Kit for Illumina (LEXOGEN).
Experiment attributes:
GEO Accession: GSM5360230
Links:
Runs: 1 run, 19.8M spots, 1.3G bases, 585.2Mb
Run# of Spots# of BasesSizePublished
SRR1474043519,758,9521.3G585.2Mb2022-05-17

ID:
14738227

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