U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX10954765: GSM5328675: KL01,control,deletion,replicate 1 [KL01c_E3]; Drosophila melanogaster; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 41.2M spots, 12.4G bases, 3.7Gb downloads

Submitted by: NCBI (GEO)
Study: Natural variation in the transcriptional response of Drosophila melanogaster to oxidative stress
show Abstracthide Abstract
Broadly distributed species must cope with diverse and changing environmental conditions, including various forms of stress. Cosmopolitan populations of Drosophila melanogaster are more tolerant to oxidative stress than those from the species' ancestral range in sub-Saharan Africa, and the degree of tolerance is associated with an insertion/deletion polymorphism in the 3' untranslated region of the Metallothionein A (MtnA) gene that varies clinally in frequency. We examined oxidative stress tolerance and the transcriptional response to oxidative stress in cosmopolitan and sub-Saharan African populations of D. melanogaster, including paired samples with allelic differences at the MtnA locus. We found that the effect of the MtnA polymorphism on oxidative stress tolerance was dependent on the genomic background, with the deletion allele increasing tolerance only in a northern, temperate population. Genes that were differentially expressed under oxidative stress included MtnA and other metallothioneins, as well as those involved in glutathione metabolism and other genes known to be part of the oxidative stress response or the general stress response. Overall design: RNA sequencing was performed on pools of whole heads of 5-7 day old male flies, either treated with menadione sodium bisulfite (MSB) or not.
Sample: KL01,control,deletion,replicate 1 [KL01c_E3]
SAMN19296082 • SRS9033031 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the RNeasy Mini Kit (Qiagen, Hilden, Germany) following the manufacturer's protocol. Poly-A mRNA purification, reverse transcription, and high-throughput sequencing were performed by Novogene (Cambridge, UK) using a Novaseq 6000 sequencer (Illumina, San Diego, CA, USA) to generate 150-bp paired-end reads.
Experiment attributes:
GEO Accession: GSM5328675
Links:
Runs: 1 run, 41.2M spots, 12.4G bases, 3.7Gb
Run# of Spots# of BasesSizePublished
SRR1461204541,168,40912.4G3.7Gb2022-01-12

ID:
14571934

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...