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SRX10754494: GSM5277463: Dex+Ins_r3; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 1500) run: 19.5M spots, 974.9M bases, 346.6Mb downloads

Submitted by: NCBI (GEO)
Study: Impaired GR expression in liver disrupts feeding induced gene expression, glucose uptake and glycogen storage
show Abstracthide Abstract
The transition from a fasted to a fed state is associated with extensive transcriptional remodeling in hepatocytes facilitated by hormonal- and nutritional-regulated transcription factors. Here, we use a liver-specific glucocorticoid receptor (GR) knock-out (L-GRKO) model and primary hepatocytes to investigate the temporal expression of GR target genes in response to feeding. Interestingly, in addition to the well described fasting-regulated genes, we identify a subset of hepatic feeding-induced genes that requires GR for full expression, adding new insights to hepatic GR function. The GR-controlled feeding-induced genes include Gck encoding the glucokinase, which is important for hepatic glucose uptake, utilization and storage. We show that insulin and glucocorticoids cooperatively regulate Gck expression in primary hepatocytes in a GR-dependent manner. ChIP-seq experiments suggest direct GR regulation of Gck by GR occupancy of the promoter and two putative regulatory regions near the Gck gene (Gck -1kb and Gck -4.6kb). Enhancer-reporter assays and CRISPRi suggest that the 4.6kb upstream GR binding site is a functional Gck enhancer. L-GRKO blunts preprandial and early postprandial Gck expression and GR disruption ultimately affects early postprandial hepatic glucose uptake, phosphorylation and glycogen storage. Collectively, our study demonstrates how GR is positively involved in the hepatic feeding response exemplified in the direct regulation of the feeding-induced transcription of glucokinase, important for hepatic glucose metabolism. Overall design: Examination of feeding regulated gene expression in liver from C57BL/6 WT and liver specific GR KO mice. Analysis of dex and insulin mediated gene expression in primary hepatocytes
Sample: Dex+Ins_r3
SAMN18977395 • SRS8836670 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 1500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA_seq: Primary hepatocytes: Cells were lysed in TRIzol-RNA lysis reagent (ThermoFisher). Liver tissue: Approximately 5 mg of liver tissues were homogenized using Ultra-Thorax in TRIzol-RNA lysis reagent. RNA was purified using EconoSpin columns (Epoc Life) according to manufacturer's instructions. ChIP-seq: Chromatin was prepared from 100-150mg formaldehyde crosslinked liver tissu. Crosslinked sonicated chromatin was IP'ed antibody and protein A/G agarose beads. DNA was extracted by phenol/choloroform. Libraries from ChIP'ed DNA were constructed using the NEBNext Library prep kit according to manufacturer´s (NEB) instructions. Total RNA (1000 ng) was prepared for sequencing using ribosome depletion followed by random primed cDNA synthesis or polydT-mediated cDNA synthesis according to the manufacturer´s (Illumina) instructions. Subsequent library preparation was performed using the NEBNext RNA library preparation kit for Illumina.
Experiment attributes:
GEO Accession: GSM5277463
Links:
Runs: 1 run, 19.5M spots, 974.9M bases, 346.6Mb
Run# of Spots# of BasesSizePublished
SRR1440230319,497,998974.9M346.6Mb2021-09-09

ID:
14293340

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