GSM5266846: A2 (experience group); Pseudoalteromonas sp. JSTW; RNA-Seq - SRA

SRX10682969: GSM5266846: A2 (experience group); Pseudoalteromonas sp. JSTW; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 19.4M spots, 2.9G bases, 869.3Mb downloads

Submitted by: NCBI (GEO)

Study: Next Generation Sequencing Facilitates Quantitative Analysis of CHAA Transcriptomes

PRJNA725272 • SRP316444 • All experiments • All runs

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Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived strain JSTW transcriptome profiling (RNA-seq) and to evaluate protocols for optimal high-throughput data analysis Overall design: mRNA profiles of JSTW strain were generated by deep sequencing, in triplicate.

Sample: A2 (experience group)

SAMN18875733 • SRS8776123 • All experiments • All runs

Organism: Pseudoalteromonas sp. JSTW

Library:

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: strain JSTW were centrifuged and collected, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM5266846

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 19.4M spots, 2.9G bases, 869.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR14328148	19,379,884	2.9G	869.3Mb	2021-04-27

ID:: 14199756

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Sequence Read Archive

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