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SRX1055356: GSM1708250: PBMC_mergedReplicates_sample1; Homo sapiens; OTHER
10 ILLUMINA (NextSeq 500) runs: 31.6M spots, 4.3G bases, 1.7Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Sex-specific chromatin accessibility profiling in human PBMCs
PRJNA286321 • SRP059332 • All experiments • All runs
show Abstracthide Abstract
We used ATAC-seq to profile the chromatin accessibility differences between sexes. We investigated the chromatin states of the PBMCs of twenty individuals, with an equal distribution of males and females, controlled for age (18-45 years old) and ethnicity (Caucasian). Overall design: We examined chromatin accesibility using ATAC-seq in the PBMCs of twenty individuals.
Sample: PBMC_mergedReplicates_sample1
SAMN03768932 • SRS958084 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: PBMCs were isolated from buffy coats using a Ficoll gradient. 50,000 cells were used for each transposition reaction. ATAC-seq libraries were prepared as described in Buenrostro et al 2013
Experiment attributes:
GEO Accession: GSM1708250
Links:
External link:
Runs: 9 runs, 31.6M spots, 4.3G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR20590542,905,586439.1M174.7Mb2016-04-11
SRR20590553,331,578503.5M208.7Mb2016-04-11
SRR20590562,875,733434.6M172.9Mb2016-04-11
SRR20590573,380,854511M210.4Mb2016-04-11
SRR20590582,911,181440M178.3Mb2016-04-11
SRR20590593,418,159516.6M216.5Mb2016-04-11
SRR20590606,377,234481.9M201.9Mb2016-04-11
SRR52355562,907,787439.5M177.7Mb2017-02-07
SRR52355573,469,447524.4M219.3Mb2017-02-07

ID:
1532129

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