U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX10484332: GSM5220461: control_0_Rep1_Lib2; Drosophila melanogaster; RNA-Seq
2 ILLUMINA (NextSeq 500) runs: 49M spots, 3.6G bases, 1.6Gb downloads

Submitted by: NCBI (GEO)
Study: Timecourse RNAseq for Drosophila TBI
show Abstracthide Abstract
Comparison of post-injury (sham versus severe TBI) gene expression changes using a Drosophila head-specific TBI model. Overall design: 64 total libraries were prepared from 52 unique RNA samples, representing the molecular response to traumatic brain injury spanning 9 timepoints from 0 through 15 days post-injury. Samples consist of heads isolated from 3d old uninjured males (controls, 0 post injury timepoint) and paired sham vs TBI injured animals (3d old males) at 1h, 3h, 6h, 12h, 24h, 3d, 7d, 10d, and 15d post-injury. All times/conditions have 3 biological replicates, with the exception of 15d due to library prep failure. Library preparation took place on two separate days (noted as library 1 or library 2), hence libraries for control and sham/TBI 24 h timepoints were prepared twice and used for batch effect correct.
Sample: control_0_Rep1_Lib2
SAMN18542744 • SRS8611768 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: whole flies were flash frozen in liquod nitrogen; heads (n=20/sample) were dissociated by vortexing then collected. Total RNA was extracted by TRIzol/chloroform. sample libraries were prepared in two batches (separate days) using the same Illumina TruSeq Stranderd Sample Kit (Cat# RS-122-2103) RNA-seq; sequenced on Illumina NextSeq using NextSeq® 500/550 High Output Kit v2 (75 cycles; FC-404-2005)
Experiment attributes:
GEO Accession: GSM5220461
Links:
Runs: 2 runs, 49M spots, 3.6G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR1411371623,968,7941.8G787.6Mb2021-07-22
SRR1411371725,058,2171.9G833.3Mb2021-07-22

ID:
13898491

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...