GSM1697283: FAIRE-seq at 24 h, replicate B; Homo sapiens; FAIRE-seq - SRA

SRX1041085: GSM1697283: FAIRE-seq at 24 h, replicate B; Homo sapiens; FAIRE-seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 32M spots, 1.6G bases, 1,014.9Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: FAIRE-seq 1,25(OH)2D3 time course in THP-1 cells

PRJNA285102 • SRP058778 • All experiments • All runs

show Abstracthide Abstract

Assessment of regions of open chromatin by FAIRE-seq in THP-1 cells treated with 1,25(OH)2D3 for 0-48 h Overall design: Three independent experiments of 1,25(OH)2D3 time course in THP-1 cells

Sample: FAIRE-seq at 24 h, replicate B

SAMN03737929 • SRS947605 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina Genome Analyzer II

Strategy: FAIRE-seq

Source: GENOMIC

Selection: other

Layout: SINGLE

Construction protocol: proteins were crosslinked with formaldehyde to DNA, then open chromatin fragments were isolated by phenol-chloroform extraction Standard protocol as suggested by the manufacturer for ChIP-seq libraries as utilized at the EMBL Gene Core in Heidelberg, Germany

Experiment attributes:

GEO Accession: GSM1697283

Links:

External link: GEO Sample GSM1697283

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 32M spots, 1.6G bases, 1,014.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR2042806	32,001,836	1.6G	1,014.9Mb	2016-01-04

ID:: 1510488

SRA

Sequence Read Archive

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