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SRX10354691: GSM5173688: N. crassa 240min [B4-1]; Neurospora crassa; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 39M spots, 7.9G bases, 2.2Gb downloads

Submitted by: NCBI (GEO)
Study: Gene expression during conidia germination in Neurospora crassa on Bird medium at 37C
show Abstracthide Abstract
Conidia germination is critical for fungi to colonize various habitats. We sampled RNA expression at four stages of conidia germination, including fresh conidia (15min), polar growth (120min), doubling of long axis (240min), and first hyphal branching (360min) in Neurospora crassa. Cultures were made on Bird medium, and two biological replicates were collected for all data points. The growth was under a labratory condition of 375C and constant light. Overall design: mRNA were sampled and compared from four time points across conida germination in Neurpsora crassa on different media
Sample: N. crassa 240min [B4-1]
SAMN18319139 • SRS8472971 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For transcriptomic analysis, all tissues and perithecia were immediately and rapidly frozen in liquid nitrogen as they were sampled, then stored at -80°C. RNA was isolated from homogenized mycelia with TRI REAGENT (Invitrogen) and mRNA was purified using Dynabeads oligo(dT) magnetic separation (Invitrogen) For purified total RNA collected from samples, strand-specific sequencing libraries were produced following the Illumina TruSeq stranded protocol.
Experiment attributes:
GEO Accession: GSM5173688
Links:
Runs: 1 run, 39M spots, 7.9G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR1397707339,014,8967.9G2.2Gb2022-03-19

ID:
13645475

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