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SRX10310809: GSM5155658: R14_t15min_50mM; Bacillus cereus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 27.2M spots, 2.2G bases, 836.6Mb downloads

Submitted by: NCBI (GEO)
Study: Characterization of a key region involved in the NO stress response of Bacillus cereus
show Abstracthide Abstract
Bacterial response to nitric oxide (NO) is of major importance for bacterial survival, as NO stress is a main actor of the eukaryote immune response. Several pathogenic bacteria have developed gene regulation systems involved in detoxification and in repairing the damages caused by NO. However, bacterial mechanisms of NO resistance are poorly described for Gram positive bacteria and especially Bacillus cereus. This food born and opportunistic pathogen does not have the common weapon against NO described in other pathogenic or non-pathogenic bacteria, such as the transcriptional regulators norR and nsrR, nor NO reductases. Using a transcriptomic approach, we investigated the mechanisms used by B. cereus to fight against NO stress. A cluster of 6 genes was identified to be particularly overexpressed in the early response to NO stress. This cluster contains an iron-sulphur cluster repair enzyme, a nitrite reductase and three enzymes involved in siroheme biosynthesis. We show a co-expression and a close genetic localization implying a functional link between those genes. This cluster may play a pivotal role in the defence mechanisms used by B. cereus to fight against NO stress during infection. Overall design: Impact of NO on B. cereus gene expression
Sample: R14_t15min_50mM
SAMN18250191 • SRS8431949 • All experiments • All runs
Organism: Bacillus cereus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bacterial pellets were frozen in liquid nitrogen. The pellet introduce in Lysing Matrix B tubes (MP Biomedicals) and high-speed homogenized in FastPrep-24™ 5G Instrument in presence of phenol. Then impurities were extracted from the aqueous phase in three stages: one step with trizol and two with chloroform. The RNAs in the aqueous phase are then precipitated with isopropanol and dissolved in purified water. Transcriptome library preparation and sequencing was performed by I2BC Paris-Saclay platform on the Illumina NextSeq sequencer to generate paired-end 40 bp reads bearing strand specificity
Experiment attributes:
GEO Accession: GSM5155658
Links:
Runs: 1 run, 27.2M spots, 2.2G bases, 836.6Mb
Run# of Spots# of BasesSizePublished
SRR1393142627,184,4302.2G836.6Mb2021-06-02

ID:
13438385

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