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SRX10184319: GSM5114084: 20-092 clinical; Streptococcus equi subsp. equi; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 59M spots, 16.7G bases, 5.4Gb downloads

Submitted by: NCBI (GEO)
Study: RNA sequencing of Streptococcus equi subsp. equi collected from carrier and acute cases
show Abstracthide Abstract
Streptococcus equi subsp. equi (SEE) is a host-restricted bacterium that causes the common infectious upper respiratory disease known as strangles in horses. Perpetuation of SEE infection appears attributable to inapparent carrier horses because it does not persist long-term in the environment, infect other host mammals or vectors, and result in short-lived immunity. Whether pathogen factors enable SEE to remain in horses without causing clinical signs remains poorly understood. Thus, our objective was to use next-generation sequencing technologies to characterize the transcriptome of isolates of SEE from horses with acute clinical strangles and inapparent carrier horses to assess pathogen-associated changes that might reflect adaptions of SEE to the host contributing to inapparent carriage. RNA sequencing of SEE isolates from Pennsylvania demonstrated no genes that were differentially expressed between acute clinical and inapparent carrier isolates of SEE. Overall design: Examination of transcripts from Streptococcus equi subsp. equi isolate collected from inapparent carrier cases and from acute clinical cases.
Sample: 20-092 clinical
SAMN18082601 • SRS8333115 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the RiboPure™ RNA Purification kit (Invitrogen™, Carlsbad, CA, USA) for bacteria, following the manufacturer's instructions. RNA libraries were prepared using the Stranded Total RNA Preparation kit (Illumina©, San Diego, CA, USA) following the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM5114084
Links:
Runs: 1 run, 59M spots, 16.7G bases, 5.4Gb
Run# of Spots# of BasesSizePublished
SRR1380056059,005,19916.7G5.4Gb2021-05-28

ID:
13311895

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