GSM5093813: NTSA213; Nematostella vectensis; RNA-Seq - SRA

SRX10134035: GSM5093813: NTSA213; Nematostella vectensis; RNA-Seq
4 ILLUMINA (Illumina HiSeq 2500) runs: 4.1M spots, 413.5M bases, 127.9Mb downloads

Submitted by: NCBI (GEO)

Study: Impact of antibiotics, cell-free supernatant, LPS, and live cells on Nematostella vectensis gene expression

PRJNA703014 • SRP307143 • All experiments • All runs

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We used bacteria isolated from field samples of Nematostella vectensis to quantify gene expression through comparisons of transcriptomes. Overall design: ntotal = 76. 19 conditions (4 replicates each) (19*4 = 76).

Sample: NTSA213

SAMN17999911 • SRS8288163 • All experiments • All runs

Organism: Nematostella vectensis

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Whole-organism RNA was extracted from animals (that were preserved in RNAlater and stored at -80) using Ambion RNAqueous extraction kit. Libraries were prepared as in Meyer et al. (2011).

Experiment attributes:

GEO Accession: GSM5093813

Links:

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 4.1M spots, 413.5M bases, 127.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR13747179	935,311	94.5M	29.6Mb	2021-02-20
SRR13747180	1,015,859	102.6M	31.6Mb	2021-02-20
SRR13747181	1,061,023	107.2M	33Mb	2021-02-20
SRR13747182	1,081,863	109.3M	33.7Mb	2021-02-20

ID:: 13261611

SRA

Sequence Read Archive

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