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SRX054622: GSM603235: Locusta_nerve
1 ILLUMINA (Illumina HiSeq 2000) run: 28.9M spots, 4.3G bases, 2.1Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Deep sequencing of the locust Locusta migratoria manilensis central nervous system transcriptome
show Abstracthide Abstract
We report the application of single-molecule-based sequencing technology for high-throughput profiling of nervous system in locust Locusta migratoria manilensis. By obtaining over 57,000,000 bases of sequence from central nervous system, we generated 101836 contigs and 69440 scaffolds. We finally get 41179 unigene with an average length of 570bp. There are 5519 unigenes beyond the length of 1000bp. Using BLAST searches of the NR, NT, Swiss-Prot, KEGG and COG databases we are able to identify 13552 unigene (E<0.0001). Comprehensive assessment of all the unigenes by comparing with the studied genes of other insects nervous system reveals that our unigene are broadly representative of the transcriptome of insect nervous system. Our data provides the most large-scale EST-project for locust nervous system, which greatly benefits the exploring of this insect. In addition, we identify a large number of novel nervous genes which can be used in systematic studies of locust and other insects. Overall design: Examination of 1 sample
Sample: Locusta_nerve
SAMN00254206 • SRS183462 • All experiments • All runs
Library:
Name: GSM603235: Locusta_nerve
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward76  reverse

Experiment attributes:
GEO Accession: GSM603235
Links:
External link:
Runs: 1 run, 28.9M spots, 4.3G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR16771228,946,3714.3G2.1Gb2011-04-06

ID:
63802

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