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SRX040411: Chromatin accessibility assay of Fetal Intestine_Small Tissue
2 ILLUMINA (Illumina Genome Analyzer IIx) runs: 48.4M spots, 1.7G bases, 1.1Gb downloads

Design: Single read - Illumina
Submitted by: Gene Expression Omnibus (GEO)
Study: University of Washington Human Reference Epigenome Mapping Project
 • SRP001371 • All experiments • All runs
show Abstracthide Abstract
Study of chromatin accessibility
Sample: Generic sample from Homo sapiens
SAMN00204035 • SRS165649 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: DS16822
Instrument: Illumina Genome Analyzer IIx
Strategy: DNase-Hypersensitivity
Source: GENOMIC
Selection: DNase
Layout: SINGLE
Spot descriptor:
1  forward

Experiment attributes: (show all 4 attributes...) (hide...)
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Met (show full text...)(hide...)
Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)
GEO Accession: GSM665835
Pipeline: show...hide...
NameStepPrev StepProgramVersion
BASE_CALLS1NILSCSv2.8
QUALITY_SCORES21SCSv2.8
Links:
External link:
External link:
Runs: 2 runs, 48.4M spots, 1.7G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR09761338,765,1861.4G893.9Mb2011-04-08
SRR0976149,680,038348.5M212.6Mb2011-04-08

ID:
47850

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