Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX360736: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-230588' containing sample 'ORNL_V42_F12'
7 ILLUMINA (Illumina HiSeq 2000) runs: 2M spots, 397.2M bases, 233.1Mb downloads

UUID: 94dd3caa-3469-4e06-9062-7a6dd16b93ff

Design: Illumina sequencing of Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-168 via random selection

Submitted by: Broad Institute (BI)

Study: HMP reference genome

PRJNA197068 • SRP030571 • All experiments • All runs

Sample: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-168

SAMN00696726 • SRS255699 • All experiments • All runs

Organism: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-168

Library:

Name: Pond-230588

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 302695.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:41WMX

material_type: DNA:DNA Somatic

product_order: PDO-526

product_part_number: P-WG-0004

project: G32690

research_project: RP-129

root_sample_id: SM-3QFJH

sample_id: SM-41WMX

work_request: 35919

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 19:07:00.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 7 runs, 2M spots, 397.2M bases, 233.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1003959	285,949	57.8M	33.9Mb	2013-09-27
SRR1003960	282,318	57M	33.4Mb	2013-09-27
SRR1003961	277,459	56M	32.9Mb	2013-09-27
SRR1003962	278,469	56.3M	33Mb	2013-09-27
SRR1003963	280,971	56.8M	33.3Mb	2013-09-27
SRR1003964	280,295	56.6M	33.2Mb	2013-09-27
SRR1003965	280,686	56.7M	33.3Mb	2013-09-27

ID:: 509941

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