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SRX2600470: GSM2516122: WT3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 34.2M spots, 6.8G bases, 3.9Gb downloads

Submitted by: NCBI (GEO)
Study: KLHL41 stabilizes skeletal muscle sarcomeres by nonproteolytic ubiquitination
show Abstracthide Abstract
Maintenance of muscle function requires assembly of contractile proteins into highly organized sarcomeres. Mutations in Kelch-like protein 41 (KLHL41) cause nemaline myopathy, a fatal muscle disorder associated with sarcomere disarray. We generated KLHL41 mutant mice, which display lethal disruption of sarcomeres and aberrant expression of muscle structural and contractile proteins, mimicking the hallmarks of the human disease. We show that KLHL41 is poly-ubiquitinated and acts, at least in part, by preventing aggregation and degradation of nebulin, an essential component of the sarcomere. Furthermore, inhibition of KLHL41 poly-ubiquitination prevents its stabilization of nebulin, suggesting a unique role for ubiquitination in protein stabilization. These findings provide new insights into the molecular etiology of nemaline myopathy and reveal a mechanism whereby KLHL41 stabilizes sarcomeres and maintains muscle function by acting as a molecular chaperone. Similar mechanisms for protein stabilization likely contribute to the actions of other Kelch proteins. Overall design: Gene expression profile was generated comparing wild type (WT) and KLHL41 knockout mice, by deep sequencing, with three biological replicates, using Illumina HiSeq 2500.
Sample: WT3
SAMN06469837 • SRS2019770 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: P0 mice were sacrificed, deskinned, and hindlimb muscle was removed from the leg and flash frozen. Total RNA was extracted using QIAGEN Rneasy mini kit. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2516122
Links:
Runs: 1 run, 34.2M spots, 6.8G bases, 3.9Gb
Run# of Spots# of BasesSizePublished
SRR529830234,193,6266.8G3.9Gb2017-09-06

ID:
3763234

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