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SRX4608916: GSM3356804: WT 2; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 62M spots, 4.6G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: STAT2 Signaling Regulates Macrophage Phenotype during Influenza and Bacterial Super-infection
show Abstracthide Abstract
Influenza is the common respiratory problem that infects between 5-20% of the US population and results in 30,000 deaths annually. A primary cause of the influenza-associated death is due to secondary bacterial pneumonia. In this study, we investigated the role of STAT2 signaling during influenza and influenza-bacterial super-infection in mice. Herein, we demonstrate that STAT2 signaling is required for viral control, regulation of inflammation, and limiting mortality during influenza single infection. Surprisingly, despite this deficiency in anti-viral immunity, we found increased bacterial control and survival in STAT2 deficient mice during influenza-MRSA super-infection compared to controls. This protection in the absence of STAT2 was associated with accumulation of dual phenotype M1/M2 macrophages, which were required for control of bacterial infection. Together, these results suggest that the STAT2 signaling is involved in suppressing macrophage activation and bacterial control during influenza-bacterial super-infection. Overall design: We analyzed whole lung RNA from WT and STAT2-/- mice infected with influenza A/PR/8/34 for 6 days followed by MRSA USA300 for one additional day.
Sample: WT 2
SAMN09910463 • SRS3713104 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Whole lung RNA was isolated using the Agilent Absolutely RNA Miniprep Kit Total RNA libraries were generated using Illumina TruSeq Stranded mRNA sample preparation kit. The first step in the workflow involves purifying the poly-A containing mRNA molecules using poly-T oligo attached magnetic beads. Following purification, the mRNA is fragmented into small pieces using divalent cations. The cleaved RNA fragments are copied into first strand cDNA using reverse transcriptase and random primers. Strand specificity is achieved by using dUTP in the Second Strand Marking Mix, followed by second strand cDNA synthesis using DNA Polymerase I and RNase H. These cDNA fragments then have the addition of a single 'A' base and subsequent ligation of the adapter. The products are then purified and enriched with PCR to create the final cDNA library.The cDNA libraries are validated using KAPA Biosystems primer premix kit with Illumina-compatible DNA primers and Qubit 2.0 fluorometer. Quality is examined using Agilent Tapestation 2200.
Experiment attributes:
GEO Accession: GSM3356804
Links:
Runs: 1 run, 62M spots, 4.6G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR775299562,023,4034.6G1.7Gb2018-12-27

ID:
6228942

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