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SRX4548310: Illumina Sequencing of MET1756 Metagenomic Paired-end Library
5 ILLUMINA (Illumina HiSeq 2500) runs: 2.5M spots, 638M bases, 294.8Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET1756 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715296 • SRS3665573 • All experiments • All runs
Library:
Name: AND1690_1_L12015345
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 5 runs, 2.5M spots, 638M bases, 294.8Mb
Run# of Spots# of BasesSizePublished
SRR7687923488,054123M54.2Mb2018-10-12
SRR7687924538,986135.8M67.2Mb2018-10-12
SRR7687925499,493125.9M57.6Mb2018-10-12
SRR7687926504,330127.1M58.3Mb2018-10-12
SRR7687927500,910126.2M57.5Mb2018-10-12

ID:
6154492

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