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SRX4409143: GSM3293749: VM2_12.5; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 13.3M spots, 694.1M bases, 634.9Mb downloads

Submitted by: NCBI (GEO)
Study: Molecular analysis of the midbrain dopaminergic niche during neurogenesis
show Abstracthide Abstract
Midbrain dopaminergic (mDA) neurons degenerate in Parkinson's disease and are one of the main targets for cell replacement therapies. A comprehensive view of the signals and cell types contributing to mDA neurogenesis is not yet available. By analyzing the transcriptome of the mouse ventral midbrain at tissue and single-cell level during mDA neurogenesis we found that three recently identified radial glia types (Rgl 1-3) contribute to different key aspects of mDA neurogenesis. While Rgl3 expressed most extracellular matrix components and multiple ligands for various pathways controlling mDA neuron development, such as Wnt and Shh, Rgl1-2 expressed most receptors. Moreover, we found that specific transcription factor networks explain the transcriptome expression profiles and suggest a function for each individual radial glia type. Overall design: Triplicate tissue samples from each combination of embryonic day E11.5, E12.5, E13.5, and E14.5 with brain region alar plate, dorsal midbrain, ventral forebrain, ventral hindbrain, and ventral midbrain.
Sample: VM2_12.5
SAMN09692870 • SRS3562788 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA isolation was performed with the RNeasy kit (Qiagen). The RNA integrity and concentration was checked using Qubit and 2200 TapeStation (Agilent). Illumina TruSeq libraries were prepared using the kit and standard protocol from Illumina.
Experiment attributes:
GEO Accession: GSM3293749
Links:
Runs: 1 run, 13.3M spots, 694.1M bases, 634.9Mb
Run# of Spots# of BasesSizePublished
SRR754275313,348,991694.1M634.9Mb2018-12-27

ID:
5991249

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