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SRX2895395: eDNA metabarcoding collected in Canadian Arctic ports to target metazoan
1 ILLUMINA (Illumina MiSeq) run: 1,020 spots, 451,126 bases, 399,694b downloads

Design: Sequencing was carried out using an Illumina MiSeq (Illumina, San Diego, USA) using a paired-end MiSeq Reagent Kit V3 (Illumina, San Diego, USA) and following the manufacturerŐs instructions
Submitted by: Universite Laval
Study: Arctic eDNA samples Raw sequence reads
PRJNA388333 • SRP108839 • All experiments • All runs
show Abstracthide Abstract
environmental DNA (eDNA) in water collected in Arctic ports
Sample: CH_Neg_C
SAMN07205562 • SRS2262914 • All experiments • All runs
Organism: seawater metagenome
Library:
Name: Churchill_2016_August_Neg_C
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 1,020 spots, 451,126 bases, 399,694b
Run# of Spots# of BasesSizePublished
SRR56591201,020451,126399,694b2017-06-09

ID:
4146177

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  • SRA Links for BioSample (Select 7205562) (1)
    SRA
  • contains similarity to Pfam domain: PF00041 (Fibronectin type III domain), Score...
    contains similarity to Pfam domain: PF00041 (Fibronectin type III domain), Score=349.3, E-value=1.3e-101, N=8; PF00047 (Immunoglobulin domain), Score=59.5, E-value=2.1e-17, N=3; PF00102 (Protein-tyrosine phosphatase), Score=794.0, E-value=1.8e-235, N=2~cDNA EST yk127e1.5 comes from this gene~cDNA EST yk8c3.3 comes from this gene~cDNA EST yk8c3.5 comes from this gene~cDNA EST yk30d1.5 comes from this gene~cDNA EST yk19c12.5 comes from this gene~cDNA EST yk38a8.5 comes from this gene~cDNA EST yk23c11.5 comes from this gene~cDNA EST yk38a8.3 comes from this gene~cDNA EST yk23c11.3 comes from this gene~cDNA EST yk42h10.3 comes from this gene~cDNA EST yk19c12.3 comes from this gene~cDNA EST yk127e1.3 comes from this gene~cDNA EST yk225d9.3 comes from this gene~cDNA EST yk225d9.5 comes from this gene~cDNA EST yk192c9.5 comes from this gene~cDNA EST yk426d1.5 comes from this gene~cDNA EST yk432c10.5 comes from this gene~cDNA EST yk432c10.3 comes from this gene~cDNA EST yk604d8.5 comes from this gene [Caenorhabditis elegans]
    gi|6434249|emb|CAA86842.2|
    Protein

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