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SRX2327556: GSM2375457: C.livia E5-E5.5 rep 3; Columba livia; RNA-Seq
4 ILLUMINA (Illumina HiSeq 2500) runs: 35.3M spots, 5.3G bases, 2.7Gb downloads

Submitted by: NCBI (GEO)
Study: Comparative transcriptomic profiling at E3-E3.5, E5-E5.5 and E8-E8.5 stages of retina development in pigeon and chicken
show Abstracthide Abstract
The macula and fovea located at the optical centre of the retina make primate visual perception unique among mammals. Pigeon retina and the human macula share a number of structural and functional properties that justify introducing the former as a new model system for retina development. Comparative transcriptome analysis of the pigeon and chicken retinas at different embryonic stages was undertaken to uncover how transcriptomic patterns translate into functional differences between the two bird species. The study showed that the pigeon’s genetic programs underlying cell differentiation are postponed until the end of the period of cell proliferation. This allows the pigeon to build a retina that displays the structural and functional traits typical of primate macula and fovea. Overall design: Triplicate samples of RNA from E3-E3.5, E5-E5.5 and E8-E8.5 stages of pigeon and chicken developing retinas were profiled by RNAseq
Sample: C.livia E5-E5.5 rep 3
SAMN05981646 • SRS1782956 • All experiments • All runs
Organism: Columba livia
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using Trizol Reagent (Life Technologies), following the manufacturer’s instructions Stranded-mRNA libraries were prepared from 1 μg of total RNA using the The TruSeq Stranded mRNA Library Preparation Kit (Illumina), following the manufacturer’s instructions
Experiment attributes:
GEO Accession: GSM2375457
Links:
Runs: 4 runs, 35.3M spots, 5.3G bases, 2.7Gb
Run# of Spots# of BasesSizePublished
SRR49298908,813,1591.3G693.6Mb2016-11-07
SRR49298918,909,8761.3G707.1Mb2016-11-07
SRR49298928,867,9171.3G699.3Mb2016-11-07
SRR49298938,692,0771.3G685.1Mb2016-11-07

ID:
3401426

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