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SRX1989417: Whole genome shotgun sequencing of Escherichia coli serovar O156:H57 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 445.9M bases, 262.5Mb downloads

External Id: EXT00204317
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA230969 • SRP058582 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample: Pathogen: environmental/food/other sample from Escherichia sp.
SAMN05226139 • SRS1593155 • All experiments • All runs
Organism: Escherichia sp. MOD1-EC6162
Library:
Name: Escherichia coli serovar O156:H57 Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O156:H57.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.1M spots, 445.9M bases, 262.5Mb
Run# of Spots# of BasesSizePublished
SRR39880161,079,153445.9M262.5Mb2016-07-29

ID:
2861845

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