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DRX046365: Illumina MiSeq sequencing of SAMD00045447
1 ILLUMINA (Illumina MiSeq) run: 523,697 spots, 79.1M bases, 32.6Mb downloads

Submitted by: NIIGATA
Study: Sequence analysis of influenza virus
show Abstracthide Abstract
Influenza A viruses continue to evolve at a high rate requiring continuous monitoring to understand their properties and maintain the efficacy of vaccines and antiviral drugs. We aimed to analyze the extent of interseasonal reassortment events among H3N2 influenza viruses and assess their potential contribution to the evolution of seasonal strains. We used next-generation sequencing to characterize the full genomes of more than100 human H3N2 influenza viruses isolated from 4 Asian countries (i.e. Japan, Myanmar, Vietnam, and Lebanon). We show evidence of frequent interseasonal reassortment events among H3N2 influenza viruses and report novel PB1-F2 and M2 gene polymorphisms conferring resistance to amantadine.
Sample: Genome of Influenza A virus (A/Vietnam/13V H3_10/2012(H3N2))
SAMD00045447 • DRS022797 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: FL-cDNA
Source: VIRAL RNA
Selection: cDNA
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 523,697 spots, 79.1M bases, 32.6Mb
Run# of Spots# of BasesSizePublished
DRR051473523,69779.1M32.6Mb2016-01-20

ID:
2178573

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