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DRX413219: MiSeq paired end sequencing of SAMD00565658
1 ILLUMINA (Illumina MiSeq) run: 261,327 spots, 137.5M bases, 73.7Mb downloads

Submitted by: National Institute of Infectious Diseases - Japan (NIID)
Study: Genomic analysis of vancomycin-resistant Enterococci isolated from an outbreak of vancomycin-resistant Enterococcus faecium ST80 in Hiroshima, Japan
PRJDB14951 • DRP010947 • All experiments • All runs
show Abstracthide Abstract
Vancomycin-resistant Enterococci (VRE) infections are on the rise worldwide. In particular, numerous cases of nosocomial infections caused by clonal complex 17 (CC17), a hospital-associated lineage of Enterococcus faecium, have been reported in Europe and other countries. An outbreak of vancomycin-resistant Enterococcus faecium ST80, which belongs to CC17, occurred in Hiroshima, Japan, between 2020 and 2021. We analyzed all VRE strains isolated in Hiroshima during the outbreak using whole-genome sequencing.
Sample: Vancomycin-resistant Enterococcus faecalis_1
SAMD00565658 • DRS347703 • All experiments • All runs
Organism: Enterococcus faecalis
Library:
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Enzymatics 5X WGS Library Preparation reagents
Runs: 1 run, 261,327 spots, 137.5M bases, 73.7Mb
Run# of Spots# of BasesSizePublished
DRR428044261,327137.5M73.7Mb2023-12-29

ID:
31137116

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