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SRX1092029: GSM1819234: DDX3 R534H total RNA-seq with sodium arsenite rep1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 57.9M spots, 5.8G bases, 3.5Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq]
PRJNA289568 • SRP060677 • All experiments • All runs
show Abstracthide Abstract
RNA expression profiles are not significantly altered by DDX3 WT or R534H expression as well as by 45 minute exposure of cells to sodium arsenite. Overall design: Cells expressing either DDX3 WT or R534H variant were treated with or without sodium arsenite and lysed in the presence of cyclohexime. Total cellular RNAs were extracted and sequenced.
Sample: DDX3 R534H total RNA-seq with sodium arsenite rep1
SAMN03855849 • SRS987656 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNAs were extracted using Zymo RNA Clean & Concentrator after depleting ribosomal RNAs with Ribo-Zero kit (EpiCentre). Libraries were prepared according to the ribosome profiling protocol (PMID: 19213877) and ARTseqTM Ribosome Profiling Kit protocol (EpiCentre).
Experiment attributes:
GEO Accession: GSM1819234
Links:
Runs: 1 run, 57.9M spots, 5.8G bases, 3.5Gb
Run# of Spots# of BasesSizePublished
SRR209698157,893,8495.8G3.5Gb2016-04-21

ID:
1597581

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